Code clean-up around object access API.
* ps/object-store:
odb: rename `read_object_with_reference()`
odb: rename `pretend_object_file()`
odb: rename `has_object()`
odb: rename `repo_read_object_file()`
odb: rename `oid_object_info()`
odb: trivial refactorings to get rid of `the_repository`
odb: get rid of `the_repository` when handling submodule sources
odb: get rid of `the_repository` when handling the primary source
odb: get rid of `the_repository` in `for_each()` functions
odb: get rid of `the_repository` when handling alternates
odb: get rid of `the_repository` in `odb_mkstemp()`
odb: get rid of `the_repository` in `assert_oid_type()`
odb: get rid of `the_repository` in `find_odb()`
odb: introduce parent pointers
object-store: rename files to "odb.{c,h}"
object-store: rename `object_directory` to `odb_source`
object-store: rename `raw_object_store` to `object_database`
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