Code clean-up.
* ps/environ-wo-the-repository: (21 commits)
environment: stop storing "core.notesRef" globally
environment: stop storing "core.warnAmbiguousRefs" globally
environment: stop storing "core.preferSymlinkRefs" globally
environment: stop storing "core.logAllRefUpdates" globally
refs: stop modifying global `log_all_ref_updates` variable
branch: stop modifying `log_all_ref_updates` variable
repo-settings: track defaults close to `struct repo_settings`
repo-settings: split out declarations into a standalone header
environment: guard state depending on a repository
environment: reorder header to split out `the_repository`-free section
environment: move `set_git_dir()` and related into setup layer
environment: make `get_git_namespace()` self-contained
environment: move object database functions into object layer
config: make dependency on repo in `read_early_config()` explicit
config: document `read_early_config()` and `read_very_early_config()`
environment: make `get_git_work_tree()` accept a repository
environment: make `get_graft_file()` accept a repository
environment: make `get_index_file()` accept a repository
environment: make `get_object_directory()` accept a repository
environment: make `get_git_common_dir()` accept a repository
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